Why does God allow evil to exist?
How can a holy God tolerate evil, as questioned in Habakkuk 1:13?

Passage Context

“Your eyes are too pure to look on evil; You cannot tolerate wrongdoing. Why then do You tolerate the treacherous? Why are You silent while the wicked swallow up those more righteous than themselves?” (Habakkuk 1:13).

Habakkuk, ministering just before the Babylonian invasion (ca. 609–605 BC), grapples with Judah’s sin and God’s announced use of a more wicked nation, Babylon, as His instrument of judgment. The prophet’s lament is not abstract: it reflects real oppression, violence, and national collapse. His question frames the perennial issue—how a perfectly holy God can appear to “tolerate” evil, whether in Judah, Babylon, or today.


The Apparent Paradox: Divine Holiness vs. the Presence of Evil

Scripture everywhere affirms God’s absolute holiness: “Holy, holy, holy is the LORD of Hosts” (Isaiah 6:3). At the same time, it narrates a fallen world where rebellion, disease, and death operate. The tension is not that God approves evil; rather, He permits it within redemptive history while remaining morally untainted. Habakkuk’s cry underscores the paradox but does not negate God’s character; it invites revelation of His larger purposes.


The Character of God: Holiness, Justice, Patience

Holiness—God’s moral perfection—demands judgment (Nahum 1:3). Justice—His perfect equity—ensures that judgment is never arbitrary (Genesis 18:25). Patience—His long-suffering love—delays immediate retribution to allow repentance (2 Peter 3:9). These attributes operate simultaneously. What looks like “toleration” is often divine patience; what looks like “inaction” is providential timing aligned with perfect justice.


The Biblical Theology of Divine Forbearance

1. Pre-Flood era: “The LORD saw that the wickedness of man was great… yet Noah found favor” (Genesis 6:5-8). Judgment came, but only after 120 years of preaching (cf. 2 Peter 2:5).

2. Canaanite iniquity: God postponed Israel’s conquest “for the iniquity of the Amorites is not yet complete” (Genesis 15:16), waiting four centuries before judgment.

3. Nineveh: Assyria received a prophetic warning (Jonah 3), repented temporarily, and judgment was delayed until Nahum’s time.

4. Judah/Babylon: Habakkuk is assured Babylon will in turn be judged (Habakkuk 2:6-20), showing God’s sequential, not absent, justice.

Divine forbearance is thus consistent Scripture-wide: God withholds immediate wrath to accomplish greater redemptive goals.


God’s Use of Secondary Causes

God often employs human agents, even wicked ones, as instruments (Isaiah 10:5-7). He “raises up” nations, then holds them accountable for their motives. This does not implicate His holiness; the moral guilt belongs to the agents. Philosophically, this is compatible with libertarian freedom: secondary causes act from their own desires, while God sovereignly orchestrates outcomes (Acts 2:23).


Temporal vs. Eternal Perspective

From a finite vantage, delayed justice looks like divine indifference. Psalm 73 recounts similar perplexity; yet entering God’s sanctuary, the psalmist “discerned their end” (Psalm 73:17). Eternity re-calibrates our timeline: “For our light and momentary affliction is producing for us an eternal glory” (2 Corinthians 4:17). Habakkuk himself moves from complaint (1:2-4) to confidence: “the righteous will live by faith” (2:4).


Covenantal Discipline and Redemptive Purpose

For God’s people, suffering is not punitive condemnation but corrective discipline (Hebrews 12:5-11). Babylon’s invasion purged idolatry from Judah, preparing the remnant, Temple reconstruction, and ultimately the Messiah’s advent (Matthew 1). Thus, God may “tolerate” a season of evil to refine His covenant community and advance salvation history.


The Cross as the Definitive Resolution

Habakkuk 1:13 reaches ultimate fulfillment at Calvary. There God did not overlook sin; He absorbed its penalty in the incarnate Son: “God presented Him as the atoning sacrifice… to demonstrate His righteousness, because in His forbearance He had passed over the sins committed beforehand” (Romans 3:25). The resurrection, attested by early creedal tradition (1 Corinthians 15:3-7) and over 500 eyewitnesses, certifies that justice was satisfied and new creation initiated. Archaeologically, the empty tomb is supported by Jerusalem burial practices (first-century ossuaries confirm the described rock-hewn tombs) and the early proclamation in the very city where refutation was easiest.


Eschatological Judgment and the Removal of Evil

God’s patience is finite: “He has set a day when He will judge the world in righteousness” (Acts 17:31). Revelation 20–22 portrays final adjudication and the eradication of evil. The prophetic vision assures Habakkuk—and us—that apparent toleration will end in comprehensive justice, vindicating God’s holiness eternally.


Philosophical Considerations: Free Will and Genuine Love

Love entails choice; coerced righteousness is oxymoronic. By granting creatures freedom, God permitted the possibility of evil while intending a greater good: a loving family that voluntarily glorifies Him. Logical coherence is maintained: God is the ultimate cause of all that exists, but not the moral author of sin. This aligns with the principle of double agency recognized in classical theism.


Evidence from History and Experience

1. Manuscript reliability assembles a stable textual base for trusting God’s self-revelation; the Dead Sea Scrolls place Habakkuk within a complete prophetic corpus predating Christ, affirming predictive consistency.

2. Modern testimonies of radical life transformation, medically documented healings (e.g., peer-reviewed case studies collected by the Global Medical Research Institute), and near-death experiences reporting encounters with Christ corroborate divine engagement rather than indifference.

3. Geological cataclysm evidence, such as poly-strate fossils and continent-wide sedimentary layers, supports a global Flood paradigm, displaying both judgment and mercy in the preservation of Noah’s family.


Practical Implications for Believers

When confronted by evil:

• Lament honestly, as Habakkuk did.

• Anchor in God’s character revealed in Scripture and supremely in Christ.

• Wait expectantly: “Though it lingers, wait for it; it will certainly come and will not delay” (Habakkuk 2:3).

• Live by faith, advancing the gospel so more may escape final judgment.

• Engage in works of mercy, prefiguring the coming Kingdom where righteousness dwells.

By integrating prophetic assurance, historical evidence, philosophical coherence, and experiential validation, the believer may trust that a holy God neither condones nor ignores evil but weaves it into a redemptive tapestry culminating in everlasting justice and joy.

How should Habakkuk 1:13 influence our response to perceived injustices today?
Top of Page
Top of Page